Welcome to fishmol doc

Fishmol is a pure python package for data analysis of molecular dynamics trajectory. This doc includes a list of jupyter notebooks illustrating the usage and features of fishmol.

Check out the content pages bundled with this home page to see more.

• I/O of molecular dynamics trajectory
• MSD and diffusion coefficient
• Diffusion anisotropy
• H bond recognition and lifetime analysis
• Reorientation lifetime of vectors